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1

Using quaternions to calculate RMSD

Evangelos A. Coutsias, Chaok Seok, Ken A. Dill

Journal:

Journal of Computational Chemistry

Year:

2004

Language:

english

File:

PDF, 135 KB

english, 2004

2

10.1090/S0002-9947-98-02024-8

Coutsias, E. A., Kazarinoff, N. D.

Journal:

Transactions of the American Mathematical Society

Year:

1998

Language:

english

File:

PDF, 450 KB

english, 1998

3

RMSD and Symmetry

Coutsias, Evangelos A., Wester, Michael J.

Journal:

Journal of Computational Chemistry

Year:

2019

Language:

english

File:

PDF, 1.66 MB

english, 2019

4

Long-time behavior of Ginzburg-Landau systems far from equilibrium

Coutsias, E., Huberman, B. A.

Journal:

Physical Review B

Year:

1981

Language:

english

File:

PDF, 498 KB

english, 1981

5

Topology of cyclo-octane energy landscape

Martin, Shawn, Thompson, Aidan, Coutsias, Evangelos A., Watson, Jean-Paul

Journal:

The Journal of Chemical Physics

Year:

2010

Language:

english

File:

PDF, 1.38 MB

english, 2010

6

The Approximate Functional Formula for the Theta Function and Diophantine Gauss Sums

E. A. Coutsias and N. D. Kazarinoff

Journal:

Transactions of the American Mathematical Society

Year:

1998

Language:

english

File:

PDF, 889 KB

english, 1998

7

A kinematic view of loop closure

Evangelos A. Coutsias, Chaok Seok, Matthew P. Jacobson, Ken A. Dill

Journal:

Journal of Computational Chemistry

Year:

2004

Language:

english

File:

PDF, 443 KB

english, 2004

8

Rotational superposition and least squares: The SVD and quaternions approaches yield identical results. Reply to the preceding comment by G. Kneller

Evangelos A. Coutsias, Chaok Seok, Ken A. Dill

Journal:

Journal of Computational Chemistry

Year:

2005

Language:

english

File:

PDF, 59 KB

english, 2005

9

The aging of nuclei in a binary mixture

E.A. Coutsias, J.C. Neu

Journal:

Physica D: Nonlinear Phenomena

Year:

1984

Language:

english

File:

PDF, 540 KB

english, 1984

10

Disorder, renormalizability, theta functions and Cornu spirals

Evangelos A. Coutsias, Nicholas D. Kazarinoff

Journal:

Physica D: Nonlinear Phenomena

Year:

1987

Language:

english

File:

PDF, 896 KB

english, 1987

11

Spectral element modeling of semiconductor heterostructures

G. von Winckel, S. Krishna, E.A. Coutsias

Journal:

Mathematical and Computer Modelling

Year:

2006

Language:

english

File:

PDF, 489 KB

english, 2006

12

Periodic solutions of a singularly perturbed delay differential equation

Mohit H. Adhikari, Evangelos A. Coutsias, John K. McIver

Journal:

Physica D: Nonlinear Phenomena

Year:

2008

Language:

english

File:

PDF, 2.17 MB

english, 2008

13

Two-dimensional turbulence in square and circular domains with no-slip walls

H.J.H Clercx, A.H Nielsen, D.J Torres, E.A Coutsias

Journal:

European Journal of Mechanics - B/Fluids

Year:

2001

Language:

english

File:

PDF, 799 KB

english, 2001

14

Protein loop modeling by using fragment assembly and analytical loop closure

Julian Lee, Dongseon Lee, Hahnbeom Park, Evangelos A. Coutsias, Chaok Seok

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2010

Language:

english

File:

PDF, 178 KB

english, 2010

15

Resultants and loop closure

Evangelos A. Coutsias, Chaok Seok, Michael J. Wester, Ken A. Dill

Journal:

International Journal of Quantum Chemistry

Year:

2006

Language:

english

File:

PDF, 279 KB

english, 2006

16

A moving boundary model of acrosomal elongation

Alan S. Perelson, Evangelos A. Coutsias

Journal:

Journal of Mathematical Biology

Year:

1986

Language:

english

File:

PDF, 987 KB

english, 1986

17

A nucleation theory of cell surface capping

E. A. Coutsias, M. J. Wester, A. S. Perelson

Journal:

Journal of Statistical Physics

Year:

1997

Language:

english

File:

PDF, 1.61 MB

english, 1997

18

Fundamental interactions of vortical structures with boundary layers in two-dimensional flows

E.A. Coutsias, J.P. Lynov

Journal:

Physica D: Nonlinear Phenomena

Year:

1991

Language:

english

File:

PDF, 4.71 MB

english, 1991

19

An accurate and efficient spectral method for studies of the dynamical properties of forced, circular shear layers

J.P. Lynov, K. Bergeron, E.A. Coutsias, A.H. Nielsen

Journal:

Applied Numerical Mathematics

Year:

2000

Language:

english

File:

PDF, 136 KB

english, 2000

20

Sub-angstrom accuracy in protein loop reconstruction by robotics-inspired conformational sampling

Mandell, Daniel J, Coutsias, Evangelos A, Kortemme, Tanja

Journal:

Year:

2009

Language:

english

File:

PDF, 418 KB

english, 2009

21

The flexibility in the proline ring couples to the protein backbone

Bosco K. Ho, Evangelos A. Coutsias, Chaok Seok, Ken A. Dill

Journal:

Protein Science

Year:

2005

Language:

english

File:

PDF, 698 KB

english, 2005

22

Scaffold Topologies. 1. Exhaustive Enumeration up to Eight Rings

Pollock, Sara N., Coutsias, Evangelos A., Wester, Michael J., Oprea, Tudor I.

Journal:

Journal of Chemical Information and Modeling

Year:

2008

Language:

english

File:

PDF, 198 KB

english, 2008

23

Iterative Assembly of Helical Proteins by Optimal Hydrophobic Packing

G. Albert Wu, Evangelos A. Coutsias, Ken A. Dill

Journal:

Year:

2008

Language:

english

File:

PDF, 940 KB

english, 2008

24

Acoustic-wave nonlinearity in stimulated Brillouin scattering

Masson, Bruce S., Coutsias, Evangelos A.

Journal:

Journal of the Optical Society of America B

Year:

1994

Language:

english

File:

PDF, 777 KB

english, 1994

25

Stable oscillations in single species growth models with hereditary effects

Donald S. Cohen, Evangelos Coutsias, John C. Neu

Journal:

Mathematical Biosciences

Year:

1979

Language:

english

File:

PDF, 541 KB

english, 1979

26

Scaffold Topologies. 2. Analysis of Chemical Databases

Wester, Michael J., Pollock, Sara N., Coutsias, Evangelos A., Allu, Tharun Kumar, Muresan, Sorel, Oprea, Tudor I.

Journal:

Journal of Chemical Information and Modeling

Year:

2008

Language:

english

File:

PDF, 1.18 MB

english, 2008

27

A reduced-order partial differential equation model for the flow in a thermosyphon

BURROUGHS, E. A., COUTSIAS, E. A., ROMERO, L. A.

Journal:

Journal of Fluid Mechanics

Year:

2005

Language:

english

File:

PDF, 267 KB

english, 2005

28

Using Delaunay Tessellation of Proteins to Improve Current ENM

Perez, Alberto, MacCallum, Justin, Hummel, Michelle, Coutsias, Evangelos, Dill, Ken A.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 51 KB

english, 2012

29

Thin-Section CT Evidence of Bronchial Thickening in Children with Stable Asthma

Ketai, Loren, Coutsias, Cecelia, Williamson, Susan, Coutsias, Vageli

Journal:

Academic Radiology

Year:

2001

Language:

english

File:

PDF, 1.11 MB

english, 2001

30

Assessing Protein Loop Flexibility by Hierarchical Monte Carlo Sampling

Nilmeier, Jerome, Hua, Lan, Coutsias, Evangelos A., Jacobson, Matthew P.

Journal:

Journal of Chemical Theory and Computation

Year:

2011

Language:

english

File:

PDF, 3.55 MB

english, 2011

31

Selective Inhibition of Initiator versus Executioner Caspases Using Small Peptides Containing Unnatural Amino Acids

Vickers, Chris J., González-Páez, Gonzalo E., Litwin, Kevin M., Umotoy, Jeffrey C., Coutsias, Evangelos A., Wolan, Dennis W.

Journal:

ACS Chemical Biology

Year:

2014

Language:

english

File:

PDF, 1.48 MB

english, 2014

32

[IEEE 1994 IEEE 21st International Conference on Plasma Sciences (ICOPS) - Santa Fe, NM, USA (6-8 June 1994)] Proceedings of 1994 IEEE 21st International Conference on Plasma Sciences (ICOPS) - Evolution Of Circular Shear Layers

Lynov, J.P., Bergeron, K., Coutsias, E.A., Nielsen, A.H.

Year:

1994

Language:

english

File:

PDF, 231 KB

english, 1994

33

Pseudospectral Solution of the Two-Dimensional Navier--Stokes Equations in a Disk

Torres, D. J., Coutsias, E. A.

Journal:

SIAM Journal on Scientific Computing

Year:

1999

Language:

english

File:

PDF, 848 KB

english, 1999

34

Nonrelativistic Kapitza-Dirac scattering

Coutsias, E. A., McIver, J. K.

Journal:

Physical Review A

Year:

1985

Language:

english

File:

PDF, 556 KB

english, 1985

35

Invertibility of current density from near-field electromagnetic data

D. J. Sheltraw, E. A. Coutsias

Year:

2003

Language:

english

File:

PDF, 475 KB

english, 2003

36

Space-charge-limit instabilities in electron beams

Coutsias, E. A., Sullivan, D. J.

Journal:

Physical Review A

Year:

1983

Language:

english

File:

PDF, 605 KB

english, 1983

37

Optimized preparation of quantum states by conditional measurements

Harel, G., Kurizki, G., McIver, J. K., Coutsias, E.

Journal:

Physical Review A

Year:

1996

Language:

english

File:

PDF, 127 KB

english, 1996

38

Delay-induced destabilization of entrainment of nerve impulses on ephaptically coupled nerve fibers

Adhikari, Mohit H., McIver, John K., Coutsias, Evangelos A.

Journal:

Physical Review E

Year:

2009

Language:

english

File:

PDF, 217 KB

english, 2009

39

On the comparison of energy sources: Feasibility of radio frequency and ambient light harvesting

Korotkevich, Alexander O., Galochkina, Zhanna S., Lavrova, Olga, Coutsias, Evangelos A.

Journal:

Renewable Energy

Year:

2015

Language:

english

File:

PDF, 209 KB

english, 2015

40

The FALC-Loop web server for protein loop modeling

Ko, J., Lee, D., Park, H., Coutsias, E. A., Lee, J., Seok, C.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 4.86 MB

english, 2011

41

Algorithmic dimensionality reduction for molecular structure analysis

Brown, W. Michael, Martin, Shawn, Pollock, Sara N., Coutsias, Evangelos A., Watson, Jean-Paul

Journal:

The Journal of Chemical Physics

Year:

2008

Language:

english

File:

PDF, 567 KB

english, 2008

42

Spectral methods in numerical plasma simulation

E. A. Coutsias, F. R. Hansen, T. Huld, G. Knorr, J. P. Lynov

Year:

1989

Language:

english

File:

PDF, 421 KB

english, 1989

43

Coherent vortical structures in two-dimensional plasma turbulence

Pecseli, H L, Coutsias, E A, Huld, T, Lynov, J P, Nielsen, A H, Rasmussen, J J

Journal:

Plasma Physics and Controlled Fusion

Year:

1992

Language:

english

File:

PDF, 292 KB

english, 1992

44

An Efficient Spectral Method for Ordinary Differential Equations with Rational Function Coefficients

Evangelos A. Coutsias, Thomas Hagstrom and David Torres

Journal:

Mathematics of Computation

Year:

1996

Language:

english

File:

PDF, 579 KB

english, 1996

45

Flexibility of Bricard’s linkages and other structures via resultants and computer algebra

Lewis, Robert H., Coutsias, Evangelos A.

Journal:

Mathematics and Computers in Simulation

Year:

2014

Language:

english

File:

PDF, 754 KB

english, 2014

46

Self-organization in circular shear layers

Bergeron, K, Coutsias, E A, Lynov, J P, Nielsen, A H

Journal:

Physica Scripta

Year:

1996

Language:

english

File:

PDF, 663 KB

english, 1996

47

A human transcription factor in search mode

Hauser, Kevin, Essuman, Bernard, He, Yiqing, Coutsias, Evangelos, Garcia-Diaz, Miguel, Simmerling, Carlos

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 3.12 MB

english, 2016

48

A Human Transcription Factor in Search Mode

Hauser, Kevin, Essuman, Bernard, Coutsias, Evangelos, Garcia-Diaz, Miguel, Simmerling, Carlos

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 43 KB

english, 2015

49

Dynamical properties of forced shear layers in an annular geometry

BERGERON, K., COUTSIAS, E. A., LYNOV, J. P., NIELSEN, A. H.

Journal:

Journal of Fluid Mechanics

Year:

2000

Language:

english

File:

PDF, 1.78 MB

english, 2000

50

Effects of thermal spread on the space charge limit of an electron beam

Coutsias, E. A.

Journal:

Journal of Plasma Physics

Year:

1984

Language:

english

File:

PDF, 248 KB

english, 1984

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